Clustal X Alternatives

Clustal X is described as 'Multiple sequence alignment software' and is an app. There are eight alternatives to Clustal X for a variety of platforms, including Windows, Linux, Mac, Web-based and Self-Hosted apps. The best Clustal X alternative is AliView, which is both free and Open Source. Other great apps like Clustal X are BioEdit, Genophore, UGENE and GeneDoc.

More about Clustal X

Clustal X alternatives page was last updated Feb 3, 2023

AliView
3 likes
AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.
4 AliView alternatives
Cost / License
Free
Open Source
Origin
Sweden
EU
Platforms
Mac
Windows
Linux
+1
Is AliView a good alternative to Clustal X?
BioEdit
2 likes
BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP/7. An intuitive multiple document interface with convenient features makes alignment and manipulation of sequences relatively easy on your desktop computer.
28 BioEdit alternatives
Cost / License
Free
Proprietary
Alerts
Discontinued
Platforms
Windows
+2
Is BioEdit a good alternative to Clustal X?
Genophore
2 likes
Genophore is an application for searching and designing proteins. It also provides a suite of bioinformatics utilities and collaboration tools.
Cost / License
Free Personal
Proprietary
Platforms
Online
Self-Hosted
Software as a Service (SaaS)
Is Genophore a good alternative to Clustal X?
UGENE
3 likes
UGENE is free open-source cross-platform bioinformatics software.
25 UGENE alternatives
Cost / License
Free
Open Source
Platforms
Mac
Windows
Linux
+4
Is UGENE a good alternative to Clustal X?
GeneDoc
1 like
A full featured multiple sequence alignment editor, analyser and shading utility for Windows.
6 GeneDoc alternatives
Cost / License
Free
Proprietary
Platforms
Windows
Is GeneDoc a good alternative to Clustal X?
Geneious
1 like
Geneious combines all the major DNA and protein sequence analysis tools into one revolutionary software solution!
28 Geneious alternatives
Cost / License
Paid
Proprietary
Platforms
Mac
Windows
Linux
+1
Is Geneious a good alternative to Clustal X?
Clustal Omega
1 like
Clustal Omega is a multiple sequence alignment program. It produces biologically meaningful multiple sequence alignments of divergent sequences. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
Cost / License
Free
Proprietary
Origin
United Kingdom
Platforms
Online
Is Clustal Omega a good alternative to Clustal X?
CLC Main Workbench
Like
QIAGEN CLC Main Workbench is ideal for DNA, RNA, & protein sequence data analysis with a wide variety of features, no advanced computer skills required! The workbench is available for Windows, Mac OS X, and Linux platforms.
Cost / License
Paid
Proprietary
Origin
Germany
EU
Platforms
Mac
Windows
Linux
Is CLC Main Workbench a good alternative to Clustal X?