Cytoscape is described as 'Open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web' and is an app in the social & communications category. There are more than 10 alternatives to Cytoscape for a variety of platforms, including Windows, Mac, Linux, Web-based and iPad apps. The best Cytoscape alternative is Gephi, which is both free and Open Source. Other great apps like Cytoscape are ikolinks, NodeXL, Wandora.org and VOSviewer.
Gephi is the leading visualization and exploration software for all kinds of graphs and networks. Gephi is open-source and free.
Gephi is the most popular Windows, Mac & Linux alternative to Cytoscape.
Gephi is the most popular Open Source & free alternative to Cytoscape.
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ikolinks is the most popular Web-based alternative to Cytoscape.
ikolinks is the most popular commercial alternative to Cytoscape.
NodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs. With NodeXL, you can enter a network edge list in a worksheet, click a button and see your graph, all in the familiar environment of the Excel...
Wandora is a general purpose information extraction, management and publishing application based on Topic Maps and Java. Wandora has graphical user interface, layered and merging information model, multiple visualization models, huge collection of information extraction, import...
VOSviewer is a software tool for constructing and visualizing bibliometric networks. These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on co-citation, bibliographic coupling, or co-authorship relations.
table-based network visualizer, a command-line tool for producing static network visualizations from a node table and an edge table.
Linkurious provides a graph visualization and analysis platform used for fraud detection, anti-money laundering, intelligence or cybersecurity. Easy to deploy and highly extensible, Linkurious Enterprise makes it easy to uncover insights hidden in complex connected data.
KeyLines is a JavaScript toolkit used by developers to build powerful network visualization applications, quickly.
KeyLines Graph Visualization Toolkit is the most popular Android, iPhone, iPad & Android Tablet alternative to Cytoscape.
Polinode is a tool that makes it easy to perform powerful network analysis. You can either upload your own network data or use the integrated relationship-based survey tool to collect data for you before analyzing and visualizing your networks.
Neoclipse is a standalone workbench application to interact with Neo4j (database directory or server). It supports Cypher, index searches, visualisation, graph updates.
Kineviz GraphXR is a browser-based visualization platform for interactive analysis of big, high dimensional, and or connected data.
GraphXR is the most popular SaaS & Self-Hosted alternative to Cytoscape.
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Handles bigger graphs than Cytoscape