PyMOL is a powerful and comprehensive molecular visualization product for rendering and animating 3D molecular structures.
Cost / License
- Paid
- Open Source
Platforms
- Mac
- Windows
- Linux
United States
Jmol Alternatives
Jmol is described as 'Free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems' and is an app in the education & reference category. There are more than 10 alternatives to Jmol for a variety of platforms, including Mac, Windows, Linux, Web-based and Android apps. The best Jmol alternative is PyMOL. It's not free, so if you're looking for a free alternative, you could try Avogadro or Calistry.org. Other great apps like Jmol are UCSF Chimera, Rasmol, VMD - Visual Molecular Dynamics and ChimeraX.
Alternatives list
- 12 PyMOL alternatives
Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Cost / License
- Free
- Open Source (BSD-3-Clause)
Platforms
- Mac
- Windows
- Linux
- United States
Calistry is an online Chemistry Calculator. Till date Calistry contains 70+ calculators in the field of Chemistry. Everything in the website is entirely free to use. Other than calculators, Calistry also provides online molecular viewers that visualizes coordinate file of...
Cost / License
- Free
- Proprietary
Application type
Platforms
- Online
- Android
UCSF Chimera is a highly extensible program for interactive visualization and analysis of molecular structures and related data.
Cost / License
- Free
- Proprietary
Platforms
- Mac
- Windows
- Linux
RasMol is a computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule structures, such as those found in the Protein Data Bank.
Cost / License
- Free
- Open Source
Platforms
- Mac
- Windows
- Linux
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
Cost / License
- Free
- Open Source
Platforms
- Mac
- Windows
- Linux
UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX can be downloaded free of charge for academic, government, nonprofit, and...
Cost / License
- Free Personal
- Proprietary
Platforms
- Mac
- Windows
- Linux
Ghemical is computational chemistry package, which is licensed under GNU GPL . The ghemical authors are listed here .
Cost / License
- Free
- Proprietary
Platforms
- Mac
- Windows
VESTA is a 3D visualization program for structural models, volumetric data such as electron/nuclear densities, and crystal morphologies.
Cost / License
- Free
- Proprietary
Platforms
- Mac
- Windows
- Linux
Jalview is a free cross-platform program for multiple sequence alignment editing, visualisation and analysis. Use it to align, view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures...
Cost / License
- Free
- Open Source (GPL-3.0)
Platforms
- Mac
- Windows
- Linux
United Kingdom
Explore detailed 3D cell biology down to the molecular level, or tour life’s molecular machines. CellWalk is a beautiful new way for students to learn biology.
Cost / License
- Freemium
- Proprietary
Platforms
- iPhone
- iPad
- visionOS
Canada
+1
RasTop is a molecular visualization software adapted from the program RasMol, which was initially developed by Roger Sayle. RasTop is particularly adapted for educational purposes and for the rapid analysis of macromolecules at the bench.
Cost / License
- Free
- Open Source
Platforms
- Mac
- Windows
- Linux
- Wine
